Treeplyr

Author: dgru

August undefined, 2024

WebAn optional argument that specifies the column of data that contains the names to be matched to the tree. By default, it is set to "detect" which finds the column with the most … WebSep 26, 2024 · A fast, consistent tool for working with data frame like objects, both in memory and out of memory.

treedata.table : a wrapper for data.table that enables fast ...

WebNEWS AND NOTES 556 Changes on CRAN 2024-12-01 to 2024-06-30 by Kurt Hornik, Uwe Ligges and Achim Zeileis In the past 7 months, 1178 new packages were added to the CRAN package repository. WebNov 10, 2024 · treeplyr: 'dplyr' Functionality for Matched Tree and Data Objects Matches phylogenetic trees and trait data, and allows simultaneous manipulation of the tree and … spectrum psychotherapy training

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WebAug 8, 2024 · Here we use the Anolis dataset from treeplyr. Traits in this dataset were randomly generated for a set of 100 species. library (ape) library (treedata.table) # Load … WebPackage ‘treeplyr’ was removed from the CRAN repository. Formerly available versions can be obtained from the archive. Archived on 2024-03-01 as issues were not corrected … WebFeb 24, 2024 · Check Details. Version: 0.1.10 Check: whether package can be installed Result: WARN Found the following significant warnings: Warning: replacing previous import ... spectrum pt waterford ct

treedata.table : a wrapper for data.table that enables fast ... - PeerJ

WebDescription. Reorders a treedata object. Both the tips and the data are automatically reordered to match. Webtreeplyr can use dplyr-style functions (filter, mutate, reorder, etc.) on objects consisting of trees plus associated data. tidytree can convert a tree object in to a tidy data frame and has other tidy approaches to manipulate tree data. evobiR can do fuzzy matching of names (to allow some differences). spectrum public wifi passwordWebtreeplyr This R package matches phylogenetic trees and trait data, and allows simultaneous manipulation of the tree and data using dplyr. treedata.table spectrum psychotherapy ct

"Webtreeplyr. An R package for using dplyr on matched tree and data objects. To install treeplyr directly from github, use the package devtools: remotes::install_github ("uyedaj/treeplyr") " - Treeplyr

Treeplyr

treeply.treedata: Run a function on the phylogeny of a

Web関数名概略; encoding: Guess and repair faulty symbol encoding. google_form: Make link to google form given user: html: Parse an HTML page. html_form WebIn treeplyr: 'dplyr' Functionality for Matched Tree and Data Objects. Description Usage Arguments Value Examples. View source: R/treeplyr_functions.R. Description. Applies a …

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Webtreeplyr: 'dplyr' Functionality for Matched Tree and Data Objects Description. Matches phylogenetic trees and trait data, and allows simultaneous manipulation of the tree and … WebOct 30, 2024 · Statistical phylogenetic methods are the foundation for a wide range of evolutionary and epidemiological studies. However, as these methods grow increasingly complex, users often encounter significant challenges with summarizing, visualizing and communicating their key results.

WebHowever, to our knowledge, treeplyr (Uyeda & Harmon, 2024) and tidytree , both based on dplyr (Wickham et al., 2024a; Wickham et al., 2024b), are to our knowledge, the only … WebOct 30, 2024 · Plotting a time-calibrated phylogeny of extinct and extant taxa. (Top) RevGadgets code for reading in and plotting a time-calibrated phylogeny of extant and extinct bears. We use the theme() function from ggplot2 to add the posterior-probability legend. (Bottom) The maximum sampled-ancestor clade-credibility tree for the bears.

Web## A treeplyr treedata object ## The dataset contains 10 traits ## Continuous traits: Binomial Family Genus SVL mass rootmass eyesize ## Discrete traits: Adult_habitat … WebWe would like to show you a description here but the site won’t allow us.

Webtreeplyr: treeplyr: 'dplyr' Functionality for Matched Tree and Data... treeplyr-defunct: Defunct functions in treeplyr; treeply.treedata: Run a function on the phylogeny of a 'treedata' …

WebNov 26, 2024 · treedata.table was >400% faster than treeplyr during the initial data/tree matching step ( Fig. 2 ). For instance, combining a dataset with 10 tips to a character matrix of 40 spectrum pullman waWebIn treeplyr: 'dplyr' Functionality for Matched Tree and Data Objects. Description Usage Arguments Value Examples. View source: R/treeplyr_functions.R. Description. This … spectrum public wifiWebFeb 28, 2024 · treeplyr: 'dplyr' Functionality for Matched Tree and Data Objects. Matches phylogenetic trees and trait data, and allows simultaneous manipulation of the tree and … spectrum public dns serversWebAn implementation that combines trait data and a phylogenetic tree (or trees) into a single object of class treedata.table. The resulting object can be easily manipulated to simultaneously change the trait- and tree-level sampling. Currently implemented functions allow users to use a data.table syntax when performing operations on the trait dataset … spectrum pulse slowthai spectrum pulmonology 4100 lakeWebIn treeplyr: 'dplyr' Functionality for Matched Tree and Data Objects. Description Usage Arguments Value Examples. View source: R/treeplyr_functions.R. Description. This … spectrum psychotherapy servicesWebFunction for checking whether a treedata object contains only numeric columns and for forcing data columns into numeric format. filterMatrix. Filter a matrix, returning either all … spectrum pulmonology grand rapids mi